#!/usr/bin/env python3 # # cust_decay.py --- Radioactive Decay and Dose # See HYSPLIT Tutorial Sec. 15.1 # # Change history: # 18 Apr 2026 (BB) - standard-aligned, cross-platform version # 16 Jun 2026 (SZ) - create image files when DSP=NO # 18 Jun 2026 (SZ) - standardize code for run_cmd(), convert_html_to_img(), # etc. across Python scripts # - ensure encoding is specified when opening files import os import sys import platform from pathlib import Path import subprocess import webbrowser if sys.version_info < (3, 8): print("Please use Python 3.8 or higher.") sys.exit(1) system = platform.system().lower() if system == "windows": PGM = Path(sys.argv[1]) if len(sys.argv) > 1 else Path("C:\\hysplit") OUT = Path(sys.argv[2]) if len(sys.argv) > 2 else PGM / "working" DSP = sys.argv[3] if len(sys.argv) > 3 else "YES" TTR = Path(os.environ.get("TTR", "C:\\Tutorial")) exe_suffix = ".exe" else: PGM = Path(sys.argv[1]) if len(sys.argv) > 1 else Path.home() / "hysplit" OUT = Path(sys.argv[2]) if len(sys.argv) > 2 else PGM / "working" DSP = sys.argv[3] if len(sys.argv) > 3 else "YES" TTR = Path(os.environ.get("TTR", Path.home() / "tutorial")) exe_suffix = "" if not PGM.exists(): script = Path(__file__).name if "__file__" in globals() else "cust_decay.py" print(f"ERROR: HYSPLIT not found at {PGM}") print(f""" Please specify the path to your HYSPLIT installation using a command-line argument: python {script} YOUR_HYSPLIT_DIRECTORY [OUT] [DSP (YES|NO)] Example: python {script} C:\\hysplit C:\\hysplit\\working YES """) sys.exit(1) if not TTR.exists(): print(f"ERROR: HYSPLIT tutorial not found at {TTR}") print(""" Please set the TTR environment variable to point to your HYSPLIT tutorial directory. For Windows users (Command Prompt): SET TTR=YOUR_HYSPLIT_TUTORIAL_DIRECTORY For Linux users (bash shell): export TTR='YOUR_HYSPLIT_TUTORIAL_DIRECTORY' For Linux users (csh or tcsh shell): setenv TTR 'YOUR_HYSPLIT_TUTORIAL_DIRECTORY'""") sys.exit(1) os.chdir(OUT) # ------------------------------------------------------------------ # Helper functions # ------------------------------------------------------------------ def run_cmd(cmd, desc="", allow_fail=False, stdout_file=None, append=False): if desc: print(f"{desc}...") exitcode = 0 with subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.STDOUT, text=True) as p: if stdout_file: mode="a" if append else "w" with open(stdout_file, mode, encoding="utf-8") as f_out: for ln in p.stdout: print(ln, end="") f_out.write(ln) else: with p.stdout as f: for ln in iter(f.readline, b'\n'): if len(ln) == 0: break print(ln.rstrip()) done = False while not done: try: exitcode = p.wait(timeout=1) done = True except subprocess.TimeoutExpired: print("WARN: subprocess timed out.") if exitcode != 0: if allow_fail: print(f"WARN: command failed with exit code {exitcode} -> {' '.join(cmd)}") else: print(f"ERROR: command failed with exit code {exitcode} -> {' '.join(cmd)}") sys.exit(1) def convert_html_to_img(html_file, img_name_frame_nums): # Split SVG into Linux-consistent naming: F00-sec71_001.svg, etc. temp_img_name = "temp" run_cmd([str(PGM / "exec" / f"splitsvg{exe_suffix}"), f"-i{html_file}", f"-o{temp_img_name}.svg"]) # Locate ImageMagick for cross-platform conversion if system == "windows": convert_exe = None imgk_dir = next( (k for k in os.environ.get('PATH', '').split(os.pathsep) if "ImageMagick" in k), None ) if imgk_dir: # Use magick.exe for ImageMagick 7.x and later. Use convert.exe for earlier versions. for cmd in ('magick', 'convert'): candidate = os.path.join(imgk_dir, f'{cmd}{exe_suffix}') if os.path.exists(candidate): convert_exe = candidate break else: convert_exe = "convert" if convert_exe: # Match Linux naming for DSP=NO mode exactly for img_name, frame_num in img_name_frame_nums: svg = Path(f"F{frame_num:02d}-{temp_img_name}.svg") run_cmd([convert_exe, str(svg), img_name]) print(f"Converted {svg} -> {img_name}") svg.unlink() else: print("ImageMagick not found — skipping .svg conversion") def find_met_dir(dat_name: str): env_override = os.environ.get("METDIR") candidates = [] if env_override: candidates.append(Path(env_override)) candidates += [ wrk / "captex", TTR / "captex", TTR, PGM / "tutorial" / "captex", PGM / "tutorial", OUT / "captex", PGM / "met", PGM / "meteorology", ] for base in candidates: if base and (base / dat_name).exists(): return base for root in [TTR, wrk, PGM]: try: for p in Path(root).rglob(dat_name): return p.parent except Exception: pass return None # ---------- Mirror BAT variables ---------- wrk = OUT.parent syr, smo, sda, shr = 83, 9, 25, 17 lat, lon, lvl = 39.90, -84.22, 10.0 run, top = 25, 10000.0 dat = "captex2_wrf27uw.bin" met = find_met_dir(dat) if met is None: print(f"ERROR: Meteorological file not found: {dat}") print("Set METDIR to the directory containing the file.") print("Example Windows: SET METDIR=C:\\Tutorial\\captex") sys.exit(1) # Clean working directory for fname in [ "ASCDATA.CFG", "LABELS.CFG", "SETUP.CFG", "CONTROL", "c137.bin", "dosedaily.html", "doseyear.html", ]: p = OUT / fname if p.exists(): p.unlink() # ASCDATA.CFG with open(OUT / "ASCDATA.CFG", "w", encoding="ascii") as f: f.write("-90.0 -180.0 lat/lon of lower left corner \n") f.write("1.0 1.0 lat/lon spacing in degrees \n") f.write("180 360 lat/lon number of data points \n") f.write("2 default land use category \n") f.write("0.2 default roughness length (m) \n") f.write(f"'{PGM / 'bdyfiles'}{os.sep}' directory of files \n") # CONTROL odir = f".{os.sep}" with open(OUT / "CONTROL", "w", encoding="ascii") as f: f.write(f"{syr:02d} {smo:02d} {sda:02d} {shr:02d}\n") f.write("1\n") f.write(f"{lat:.2f} {lon:.2f} {lvl:.1f}\n") f.write(f"{run}\n") f.write("0\n") f.write(f"{top:.1f}\n") f.write("1\n") f.write(f"{met}{os.sep}\n") f.write(f"{dat}\n") f.write("1\n") f.write("C137\n") f.write("1.0E+16\n") f.write("1.0\n") f.write("00 00 00 00 00\n") f.write("1\n") f.write("42.0 -78.0\n") f.write("0.25 0.25\n") f.write("15.0 25.0\n") f.write(f"{odir}\n") f.write("c137.bin\n") f.write("2\n") f.write("0 100\n") f.write("83 09 25 18 00\n") f.write("83 09 28 15 00\n") f.write("00 03 00\n") f.write("1\n") f.write("1.0 1.0 1.0\n") f.write("0.001 0.0 0.0 0.0 0.0\n") f.write("0.0 8.0E-05 8.0E-05\n") f.write("10960.0\n") f.write("0.0\n") # SETUP.CFG with open(OUT / "SETUP.CFG", "w", encoding="ascii") as f: f.write("&SETUP\n") f.write("numpar = 50000,\n") f.write("maxpar = 100000,\n") f.write("/\n") # Run model run_cmd([str(PGM / "exec" / f"hycs_std{exe_suffix}")], "Running hycs_std") def write_labels(mapid): with open(OUT / "LABELS.CFG", "w", encoding="ascii") as f: f.write(f"'TITLE&','### {Path(sys.argv[0]).name} ### &'\n") f.write("'UNITS&','REM&'\n") f.write("'VOLUM&',' &'\n") f.write(f"'MAPID&','{mapid}&'\n") # Daily dose plot write_labels("24-h Dose Equivalent") run_cmd([ str(PGM / "exec" / f"concplot{exe_suffix}"), "+g1", "-ic137.bin", "-z80", "-x1.0E-10", "-y2.6E-11", "-b0", "-t100", "-r3", f"-j{PGM / 'graphics' / 'arlmap'}", "-odosedaily", ], "Plotting daily dose") html_file = OUT / "dosedaily.html" if html_file.exists(): if DSP == "YES": webbrowser.open(str(html_file.resolve())) else: convert_html_to_img(str(html_file), [("rad007.png",9)]) if DSP == "YES": input("Press Enter to continue...") # Yearly dose plot write_labels("1-yr Dose Equivalent") run_cmd([ str(PGM / "exec" / f"concplot{exe_suffix}"), "+g1", "-ic137.bin", "-z80", "-x1.0E-10", "-y9.6E-9", "-b0", "-t100", "-r3", f"-j{PGM / 'graphics' / 'arlmap'}", "-odoseyear", ], "Plotting yearly dose") html_file = OUT / "doseyear.html" if html_file.exists(): if DSP == "YES": webbrowser.open(str(html_file.resolve())) else: convert_html_to_img(str(html_file), [("rad008.png",9)]) print("\nScript completed successfully!")